>anda-contig_859

gnl|CDD|86518 pfam04043, PMEI, Plant invertase/pectin methyleste...    59   1e-009
gnl|CDD|32729 COG2905, COG2905, Predicted signal-transduction pr...    37   0.003
gnl|CDD|78817 PRK12323, PRK12323, DNA polymerase III subunits ga...    37   0.004
gnl|CDD|66617 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV)...    35   0.014
gnl|CDD|68674 pfam05109, Herpes_BLLF1, Herpes virus major outer ...    35   0.018
gnl|CDD|67608 pfam03999, MAP65_ASE1, Microtubule associated prot...    34   0.033
gnl|CDD|84650 pfam00260, Protamine_P1, Protamine P1..                  32   0.096
gnl|CDD|69476 pfam05956, APC_basic, APC basic domain. This regio...    32   0.12 
gnl|CDD|86791 pfam05110, AF-4, AF-4 proto-oncoprotein. This fami...    32   0.12 
gnl|CDD|66895 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote...    32   0.12 
gnl|CDD|84229 PRK12678, PRK12678, transcription termination fact...    32   0.17 
gnl|CDD|76825 PRK08853, PRK08853, DNA polymerase III subunits ga...    31   0.22 
gnl|CDD|82074 PRK07003, PRK07003, DNA polymerase III subunits ga...    31   0.25 
gnl|CDD|67003 pfam03363, Herpes_LP, Herpesvirus leader protein..       31   0.30 
gnl|CDD|72153 pfam08729, HPC2, Histone promoter control 2 (HPC2)...    30   0.43 
gnl|CDD|33077 COG3266, DamX, Uncharacterized protein conserved i...    30   0.50 
gnl|CDD|72905 cd04669, Nudix_Hydrolase_11, Members of the Nudix ...    30   0.61 
gnl|CDD|82344 PRK07764, PRK07764, DNA polymerase III subunits ga...    30   0.62 
gnl|CDD|64157 pfam00277, SAA, Serum amyloid A protein..                29   0.86 
gnl|CDD|82441 PRK07994, PRK07994, DNA polymerase III subunits ga...    29   0.89 
gnl|CDD|82879 PRK09243, PRK09243, nicotinate phosphoribosyltrans...    29   0.94 
gnl|CDD|47527 smart00197, SAA, Serum amyloid A proteins; Serum a...    29   0.95 


==> gnl|CDD|86518 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor.
           This domain inhibits pectin methylesterases (PMEs) and
           invertases through formation of a non-covalent 1:1
           complex. It has been implicated in the regulation of
           fruit development, carbohydrate metabolism and cell wall
           extension (see ). It may also be involved in inhibiting
           microbial pathogen PMEs. It has been observed that it is
           often expressed as a large inactive preprotein. It is
           also found at the N-termini of PMEs predicted from DNA
           sequences (personal obs:C Yeats), suggesting that both
           PMEs and their inhibitor are expressed as a single
           polyprotein and subsequently processed. It has two
           disulphide bridges and is mainly alpha-helical..
          Length = 149

 Score = 58.9 bits (141), Expect = 1e-009
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 1/141 (0%)
 Frame = +1

Query: 166 ACKYTSHVDRCVQSLTGKHESQGADLHGVVAMSFKVAVEVGTGVAADISKTLNTGVKDKA 345
            CK T++ D CV SL+    S   D   +   + K A+   T   + ISK       D  
Sbjct: 10  ICKSTTYPDLCVSSLSSDPRSPTTDPKDLAKAAIKAALSNATKTLSFISKLKKKA-TDPR 68

Query: 346 LWQCPSACSSGFENAIKKLDVSMAGMDRKAMADTMGWMMTVVADTEKCCGGCKHF-EGEV 522
                  C   +++A+ +L+ ++  +      D   W+   + + + C  G +    G+ 
Sbjct: 69  EKAALKDCLELYDDAVDRLEKALEELKSGDYDDAQTWLSAALTNQDTCLDGFEELNTGKS 128

Query: 523 KEQLMGMMGKFGXQCSITXDL 585
            + L           S    L
Sbjct: 129 PKTLKKRNDNLKKLTSNALAL 149



==> gnl|CDD|32729 COG2905, COG2905, Predicted signal-transduction protein containing
           cAMP-binding and CBS domains [Signal transduction
           mechanisms].
          Length = 610

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
 Frame = -1

Query: 260 MATTP--CRS-APWLSCFPVRDWTQRSTWDVYLHASGKETGQGTAGGGVWAKD*VARERQ 90
           MA+ P  C+S A W      R W +  T +  LH S     +  AG    A+D     ++
Sbjct: 405 MASNPEWCKSQAEWKDTL--RRWIKEPTPEALLHLSIFFDFRPVAGDEALAEDLKQNLKR 462

Query: 89  RMRRG 75
           R    
Sbjct: 463 RAEGN 467



==> gnl|CDD|78817 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau.
          Length = 681

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 15/118 (12%)
 Frame = +2

Query: 104 PLNPSPTRPRRPYPVRSLCLRHANTHPTSTAASNPSRESTRARAPTCTASSPCPLR---- 271
             N +P     P P      R A     +T A+    E   A A    A+ P P      
Sbjct: 430 APNMAPAPAPAPRPEPQPARRPAAAPVAATPAAVAEPEPVAAPAAPARAAEPAPQPEVPP 489

Query: 272 WQ-----------WRSAPASPPTSQKP*TRASKTRPSGSVLVPAPVASRMLSRSSTYP 412
           W+           ++S P   P +     RA    P  ++  PAP A       +  P
Sbjct: 490 WEDLPPDLAVPGPYQSDPTRAPAAAAAPARADDDGPPATLPAPAPAAMPAPRAPTPRP 547



 Score = 34.3 bits (77), Expect = 0.029
 Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 4/121 (3%)
 Frame = +2

Query: 92  ASP*PLNPSPT----RPRRPYPVRSLCLRHANTHPTSTAASNPSRESTRARAPTCTASSP 259
           A+P P   +P        RP P  ++    A       AA + +R   R  A    A +P
Sbjct: 378 AAPAPRAAAPAAAAPAETRPEPTPAMSPARAALAAARQAARSAARGGGRMSAAPNMAPAP 437

Query: 260 CPLRWQWRSAPASPPTSQKP*TRASKTRPSGSVLVPAPVASRMLSRSSTYPWREWTGRPW 439
            P       AP   P   +    A       +V  P PVA+      +  P  +    PW
Sbjct: 438 AP-------APRPEPQPARRPAAAPVAATPAAVAEPEPVAAPAAPARAAEPAPQPEVPPW 490

Query: 440 Q 442
           +
Sbjct: 491 E 491



 Score = 32.3 bits (72), Expect = 0.11
 Identities = 29/124 (23%), Positives = 41/124 (33%), Gaps = 4/124 (3%)
 Frame = +2

Query: 92  ASP*PLNPSPTRPRRPYPVRSLCLRHANTHPTSTAASNPSRES-TRARAPTCTASSP-CP 265
           A P     +P     P          A T P  T A +P+R +   AR    +A+     
Sbjct: 367 AGPATAVQAPAAAPAPRAAAPAAAAPAETRPEPTPAMSPARAALAAARQAARSAARGGGR 426

Query: 266 LRWQWRSAPASPPTSQKP*TRASKTRPSGSVLVPAPVASRMLSRSSTYPWR--EWTGRPW 439
           +      APA  P  +     A +   +     PA VA      +   P R  E   +P 
Sbjct: 427 MSAAPNMAPAPAPAPRPEPQPARRPAAAPVAATPAAVAEPEPVAAPAAPARAAEPAPQPE 486

Query: 440 QTPW 451
             PW
Sbjct: 487 VPPW 490



==> gnl|CDD|66617 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
           initially from a Japanese patient with hepatitis of
           unknown aetiology, has since been found to infect both
           healthy and diseased individuals and numerous prevalence
           studies have raised questions about its role in
           unexplained hepatitis. ORF1 is a large 750 residue
           protein..
          Length = 750

 Score = 35.4 bits (80), Expect = 0.014
 Identities = 20/46 (43%), Positives = 21/46 (45%)
 Frame = -2

Query: 319 RFLRCRRRRRCRPPLPP*RTWRRRRAGRRPGSRAFP*GIGRSGRRG 182
           R+ R RRRRR R         RRRR  RR G R       R  RRG
Sbjct: 12  RWRRWRRRRRRRRRRR-----RRRRPARRRGRRRTV----RRRRRG 48



 Score = 32.0 bits (71), Expect = 0.14
 Identities = 20/62 (32%), Positives = 21/62 (33%)
 Frame = -2

Query: 418 PPWIRRAS**HSRSHWSRH*DTARGPCL*RPCSRFLRCRRRRRCRPPLPP*RTWRRRRAG 239
             W RR      R  W R     R     R   R  R  RRR  R  +   R  R RR  
Sbjct: 3   YGWWRR-----RRRRWRRW---RRRRRRRRRRRRRRRPARRRGRRRTVRRRRRGRWRRRY 54

Query: 238 RR 233
           RR
Sbjct: 55  RR 56



 Score = 31.6 bits (70), Expect = 0.16
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 186 RRPLRPIPHGKAREPGRRPARRRRHVL*GGSGGRHRRRRRHLKNLEHGRQRQ 341
           RR  R     + R P RR   RRR V       R R RRR+ +    GR+R+
Sbjct: 18  RRRRRRRRRRRRRRPARR-RGRRRTV---RRRRRGRWRRRYRRWRRKGRRRR 65



==> gnl|CDD|68674 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
           glycoprotein (BLLF1). This family consists of the BLLF1
           viral late glycoprotein, also termed gp350/220. It is
           the most abundantly expressed glycoprotein in the viral
           envelope of the Herpesviruses and is the major antigen
           responsible for stimulating the production of
           neutralising antibodies in vivo..
          Length = 830

 Score = 35.0 bits (79), Expect = 0.018
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 4/119 (3%)
 Frame = +2

Query: 68  IFTLSSSFASP*PLNPSPTRPRRPYPVRSLCLRHANTHPTSTAASNPSRESTRARAPTCT 247
           IF  +     P      PT P  P P  +          + T     S       +PT  
Sbjct: 433 IFVYTLVHVEPHKTTAVPTTPSLP-PASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSR 491

Query: 248 ASSPCPLRWQWRSAPASP----PTSQKP*TRASKTRPSGSVLVPAPVASRMLSRSSTYP 412
            +S  P       A  +P    PT+QK     + T P+  V+     A+   + +++ P
Sbjct: 492 TTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVP 550



==> gnl|CDD|67608 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
           family)..
          Length = 619

 Score = 33.9 bits (76), Expect = 0.033
 Identities = 25/126 (19%), Positives = 37/126 (29%), Gaps = 5/126 (3%)
 Frame = +2

Query: 74  TLSSSFASP*PLNPSPTR-PRRPYPVRSLCLRHANTHPTSTAASN----PSRESTRARAP 238
               S  S  P  PS  R  R          R  N   +S +        S  +T   + 
Sbjct: 459 PPYGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLTKSSLSQEASLISKSTGNTHKHST 518

Query: 239 TCTASSPCPLRWQWRSAPASPPTSQKP*TRASKTRPSGSVLVPAPVASRMLSRSSTYPWR 418
               ++   L    RS+  +   S      +S     GS+   +P  S  L R      R
Sbjct: 519 PRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVPLVRVFDIHLR 578

Query: 419 EWTGRP 436
             T + 
Sbjct: 579 ASTTKG 584



==> gnl|CDD|84650 pfam00260, Protamine_P1, Protamine P1..
          Length = 50

 Score = 32.3 bits (72), Expect = 0.096
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = -2

Query: 388 HSRSHWSRH*DTARGPCL*RPCSRFLRCRRRRRCRPPLPP*RTWRRRRAGRRPGSR 221
             RS        +R  C  R   R  RCRRRRR           RRRR  RR    
Sbjct: 5   CCRSR-------SRSRCRRR---RRRRCRRRRRRCGR----SRRRRRRCCRRYYRS 46



 Score = 31.2 bits (69), Expect = 0.26
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 216 KAREPGRRPARRRRHVL*GGSGGRHRRRRRHLKNLEHGRQRQ 341
           ++R   RR  RRR        G   RRRRR  +     R+R+
Sbjct: 9   RSRSRCRRRRRRRCRRRRRRCGRSRRRRRRCCRRYYRSRRRR 50



 Score = 29.6 bits (65), Expect = 0.79
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
 Frame = -2

Query: 322 SRFLRCR--RRRRCRPPLPP*RTWRRRRAGRRPGSRAFP*GIGRSGRR 185
           +R+  CR   R RCR         RRRR GR    R       R  RR
Sbjct: 1   ARYRCCRSRSRSRCRRRRRRRCRRRRRRCGRSRRRR------RRCCRR 42



==> gnl|CDD|69476 pfam05956, APC_basic, APC basic domain. This region of the APC
           family of proteins is known as the basic domain. It
           contains a high proportion of positively charged amino
           acids and interacts with microtubules..
          Length = 342

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
 Frame = +2

Query: 80  SSSFASP*PLNPSPTRPRRPYPVRSLC------LRHANTHPTSTAASNP--SRESTRARA 235
           S+   +      SP R R   P   LC      LR     P + A      +   T+   
Sbjct: 232 SAESLASSSQPASPRRGRPALPAVFLCSSRCVELRGWPRQPPNLAPQREPNAGPPTKRHD 291

Query: 236 PTCTASSPCPLRWQWRSAPASPPTSQKP*T--RASKTRPSGSVLVPAPVAS 382
              T  S  P R   R+    P T ++  +    S  R + S  V    AS
Sbjct: 292 IRRT-HSESPSRLPVRAGTWRPETVKRYASLPHISVWRRTDSA-VSILSAS 340



==> gnl|CDD|86791 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of AF4
            (Proto-oncogene AF4) and FMR2 (Fragile X E mental
            retardation syndrome) nuclear proteins. These proteins
            have been linked to human diseases such as acute
            lymphoblastic leukaemia and mental retardation. The
            family also contains a Drosophila AF4 protein homologue
            Lilliputian which contains an AT-hook domain. Lilliputian
            represents a novel pair-rule gene that acts in
            cytoskeleton regulation, segmentation and morphogenesis
            in Drosophila..
          Length = 1209

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 13/88 (14%)
 Frame = +2

Query: 95   SP*PLNPSPTRPRRPYPVRSLCLRHANTHPTSTAASNPSRESTRARAP------------ 238
            S    +PS   P+R                +ST +S+ S+       P            
Sbjct: 866  SSSSQSPSRDAPKRSRVSEDTGSSSPPKSISSTKSSSSSKPKRTEGKPKKTASSSEHAGS 925

Query: 239  -TCTASSPCPLRWQWRSAPASPPTSQKP 319
             T  A+            P+ P ++ KP
Sbjct: 926  STDAANINSMTSPF--PVPSLPSSNAKP 951



==> gnl|CDD|66895 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses
           are single stranded RNA viruses. This family includes a
           protein of unknown function that has been named based on
           its molecular weight. Tymoviruses such as the ononis
           yellow mosaic tymovirus encode only three proteins. Of
           these two are overlapping this protein overlaps a larger
           ORF that is thought to be the polymerase..
          Length = 465

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
 Frame = +3

Query: 84  HPLPLPSHSILRPHAPAGRTLSGLFA*GMQIHIPRRPLRPIPHGKAREPGRR---PARRR 254
           HPLP     +L+  +   + L    +    +H+     RP      R   RR   PA RR
Sbjct: 160 HPLPKTRQPVLQSRSSPRKPLHRPLSLPRSLHLH--NDRPHSPLHPRRSLRRQLQPAPRR 217



 Score = 30.8 bits (68), Expect = 0.34
 Identities = 26/101 (25%), Positives = 36/101 (35%)
 Frame = +2

Query: 98  P*PLNPSPTRPRRPYPVRSLCLRHANTHPTSTAASNPSRESTRARAPTCTASSPCPLRWQ 277
           P PL+  PTRP  P P R      ++T P S           R R    +   P P    
Sbjct: 243 PSPLHTHPTRPPLPPPYRPAK---SSTLPLSPILP-------RPRPDKRSGILPNPRLRG 292

Query: 278 WRSAPASPPTSQKP*TRASKTRPSGSVLVPAPVASRMLSRS 400
             +    PPTSQ P     + + S  +    P +  +  R 
Sbjct: 293 TSTGHLPPPTSQAPPRANERLQRSLHLHSSRPNSPHLRPRR 333