dCAS Online Manual

• Introduction to dCAS
  • Background
  • General Workflow
  • Workflow Components
    • NCBI BLAST Executable and BLAST databases
    • Cap3
    • Phred
    • SignalP
    • TMHMM
  • Limitations
  • Release notes
• Installation
  • Installing Third Party Components
    • Step 1 Installing the NCBI BLAST Executable
    • Step 2 Installing the NCBI BLAST databases
    • Step 3 Installing Cap3
    • Step 4 Installing Phred (optional)
  • Installing dCAS
    • Download dCAS installer program
    • Run dCAS installer program
    • Run dCAS program
  • Uninstallation
  • Update
• Configuration
  • Basic Setup
  • UniVec Database
  • BLAST Databases
• Workflow
  • Core Workflow
    • Initiator
    • Stripper
    • Cluster
    • SignalP
    • TMHMM 2.0
    • GenBlast
    • TableMaker
  • Compare Library Workflow
    • Compare Library Initiator
  • Workflow Control
  • Job Status
• Manual Curation
  • Worksheet Structure
    • Annotation field
    • Sequence statistic field
    • Annotation evidence field
  • Worksheet Features
  • Statistics Report
• Library Management
  • Reprocessing Libraries
  • Exporting and Importing Libraries
• Utility Functions
  • Format BLAST Database
  • SoloBlast
  • AssemblyJoiner
    • AssemblyJoiner Control Panel
    • Translation Frame Panel
    • SignalP Panel
    • Name It Window
  • Prepare dbEST Submission
    • Choose an EST library
    • Organism, Cell, and Vector
    • Contact Person
    • Publication
    • Data of Public
    • Summary Window
• dCAS Mate
• Help
  • Instruction Panel
  • Help Window
• References
• Citing dCAS
• Disclaimer